3IEI

Crystal structure of human leucine carboxylmethyltransferase-1 in complex with S-adenosyl homocysteine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural Insights into Novel Functions of a pro-survival PP2A-specific Methyltransferase

Stanevich, V.Jiang, L.Satyshur, K.A.Li, Y.Jeffrey, P.D.Li, Z.Semmelhack, M.F.Xing, Y.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Leucine carboxyl methyltransferase 1ABCDEFGH334Homo sapiensMutation(s): 4 
Gene Names: CGI-68LCMTLCMT-1LCMT1
EC: 2.1.1 (PDB Primary Data), 2.1.1.233 (UniProt)
Find proteins for Q9UIC8 (Homo sapiens)
Explore Q9UIC8 
Go to UniProtKB:  Q9UIC8
NIH Common Fund Data Resources
PHAROS  Q9UIC8
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download CCD File 
A, B, C, D, E, F, G, H
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
MES
Query on MES

Download CCD File 
B, D, E, H
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download CCD File 
A, B, C, D, E, F, G, H
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 106.036α = 105.41
b = 81.127β = 93.97
c = 82.816γ = 104.29
Software Package:
Software NamePurpose
CBASSdata collection
PHASERphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2009-07-22 
  • Released Date: 2010-08-11 
  • Deposition Author(s): Xing, Y., Jeffry, P.D.

Revision History 

  • Version 1.0: 2010-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance