3I5V

Crystal structure of beta toxin 275-280 from Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure and biological functions of beta toxin from Staphylococcus aureus: Role of the hydrophobic beta hairpin in virulence

Huseby, M.Shi, K.Kruse, A.C.Digre, J.Mengistu, F.Bohach, G.A.Schlievert, P.S.Ohlendorf, D.H.Earhart, C.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Beta-hemolysin
A, B, C, D
313Staphylococcus aureusMutation(s): 0 
Gene Names: hlb (plc)
EC: 3.1.4.3
Find proteins for P09978 (Staphylococcus aureus)
Go to UniProtKB:  P09978
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DGA
Query on DGA

Download SDF File 
Download CCD File 
D
DIACYL GLYCEROL
C39 H76 O5
UHUSDOQQWJGJQS-QNGWXLTQSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.214 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 55.184α = 93.06
b = 69.053β = 94.60
c = 75.654γ = 92.13
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
AMoREphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance