Download MendeleyCrystal structure of AsnC family transcriptional regulator from Agrobacterium tumefaciens
Cymborowski, M., Chruszcz, M., Luo, H., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W.To be published.
3I4P
Crystal structure of AsnC family transcriptional regulator from Agrobacterium tumefaciens
- PDB DOI: 10.2210/pdb3I4P/pdb
- Classification: transcription regulator
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2009-07-02 Released: 2009-07-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.214
- R-Value Work: 0.188
- R-Value Observed: 0.189
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator, AsnC family | A | 162 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: AGR_C_3460, Atu1885 |  |
UniProt | |||||
Find proteins for A9CIH8 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CIH8 Go to UniProtKB: A9CIH8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9CIH8 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ACT Query on ACT | H [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | Ligand Interaction | |
| CA Query on CA | F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | B [auth A], C [auth A], D [auth A], E [auth A], G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.214
- R-Value Work: 0.188
- R-Value Observed: 0.189
- Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 141.833 | α = 90 |
| b = 141.833 | β = 90 |
| c = 50.283 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data collection |
| HKL-2000 | data reduction |
| HKL-3000 | phasing |
| MLPHARE | phasing |
| DM | model building |
| SHELXD | phasing |
| RESOLVE | model building |
| ARP | model building |
| Coot | model building |
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| DM | phasing |
| SHELXE | model building |
| RESOLVE | phasing |
| CCP4 | phasing |
Entry History
Deposition Data
- Deposited Date: 2009-07-02
- Released Date: 2009-07-28 Deposition Author(s): Cymborowski, M., Chruszcz, M., Luo, H., Xu, X., Savchenko, A., Edwards, A., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-07-28
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
