3I4P

Crystal structure of AsnC family transcriptional regulator from Agrobacterium tumefaciens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of AsnC family transcriptional regulator from Agrobacterium tumefaciens

Cymborowski, M.Chruszcz, M.Luo, H.Xu, X.Savchenko, A.Edwards, A.Joachimiak, A.Minor, W.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transcriptional regulator, AsnC family
A
162Agrobacterium fabrum (strain C58 / ATCC 33970)Mutation(s): 0 
Find proteins for A9CIH8 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Go to UniProtKB:  A9CIH8
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.188 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 141.833α = 90.00
b = 141.833β = 90.00
c = 50.283γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000phasing
SHELXEmodel building
MLPHAREphasing
RESOLVEmodel building
Cootmodel building
HKL-3000data collection
RESOLVEphasing
HKL-3000data scaling
SHELXDphasing
DMphasing
DMmodel building
CCP4phasing
HKL-2000data reduction
ARPmodel building
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-07-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance