3HUP

High-resolution structure of the extracellular domain of human CD69


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.133 
  • R-Value Observed: 0.135 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The high-resolution structure of the extracellular domain of human CD69 using a novel polymer

Kolenko, P.Skalova, T.Vanek, O.Stepankova, A.Duskova, J.Hasek, J.Bezouska, K.Dohnalek, J.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 1258-1260

  • DOI: 10.1107/S1744309109043152
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The structure of the extracellular domain of human CD69 has been determined by single-crystal X-ray diffraction. The structure refined to 1.37 A resolution provides further details of the overall structure and the asymmetric interface between the mon ...

    The structure of the extracellular domain of human CD69 has been determined by single-crystal X-ray diffraction. The structure refined to 1.37 A resolution provides further details of the overall structure and the asymmetric interface between the monomers in the native dimer. The protein was crystallized using di[poly(ethylene glycol)] adipate, which also served as a cryoprotectant. This is the first report of a crystal structure determined using crystals grown with this polymer.


    Organizational Affiliation

    Institute of Macromolecular Chemistry AS CR, v.v.i., Heyrovského nám. 2/1888, 162 06 Praha 6, Czech Republic. kolenko@imc.cas.cz



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Early activation antigen CD69
A, B
130Homo sapiensMutation(s): 0 
Gene Names: CD69CLEC2C
Find proteins for Q07108 (Homo sapiens)
Go to UniProtKB:  Q07108
NIH Common Fund Data Resources
PHAROS  Q07108
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
NA
Query on NA

Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.184 
  • R-Value Work: 0.133 
  • R-Value Observed: 0.135 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 86.067α = 90
b = 86.067β = 90
c = 61.975γ = 120
Software Package:
Software NamePurpose
MxCuBEdata collection
MOLREPphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-12-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance