Download MendeleyThe crystal structure of human ABL2 in complex with GLEEVEC
Salah, E., Ugochukwu, E., Barr, A., Mahajan, P., Shrestha, B., Savitsky, P., Knapp, S.To be published.
3GVU
The crystal structure of human ABL2 in complex with GLEEVEC
- PDB DOI: 10.2210/pdb3GVU/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Trichoplusia ni
- Mutation(s): No
- Deposited: 2009-03-31 Released: 2009-04-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.226
- R-Value Work: 0.189
- R-Value Observed: 0.191
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tyrosine-protein kinase ABL2 | A | 292 | Homo sapiens | Mutation(s): 0 Gene Names: ABL2, ABLL, ARG EC: 2.7.10.2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P42684 (Homo sapiens) Explore P42684 Go to UniProtKB: P42684 | |||||
PHAROS: P42684 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P42684 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| STI Query on STI | B [auth A], C [auth A] | 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE C29 H31 N7 O KTUFNOKKBVMGRW-UHFFFAOYSA-N |  | Ligand Interaction | |
| Binding Affinity Annotations | |||
|---|---|---|---|
| ID | Source | Binding Affinity | |
| STI | BindingDB: 3GVU | Ki: min: 13, max: 7000 (nM) from 5 assay(s) | |
| Kd: min: 1, max: 1.00e+4 (nM) from 27 assay(s) | |||
| IC50: min: 1.1, max: 1.00e+4 (nM) from 55 assay(s) | |||
| EC50: min: 34, max: 1000 (nM) from 4 assay(s) | |||
| PDBBind: 3GVU | Kd: 10 (nM) from 1 assay(s) | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.05 Å
- R-Value Free: 0.226
- R-Value Work: 0.189
- R-Value Observed: 0.191
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 88.46 | α = 90 |
| b = 99.44 | β = 90 |
| c = 87.81 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MAR345 | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2009-04-21 Deposition Author(s): Ugochukwu, E., Salah, E., Barr, A., Mahajan, P., Shrestha, B., Savitsky, P., Chaikuad, A., Filippakopoulos, P., Roos, A., Pike, A.C.W., von Delft, F., Bountra, C., Arrowsmith, C.H., Weigelt, J., Edwards, A., Knapp, S., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2009-04-21
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description
