3GVU

The crystal structure of human ABL2 in complex with GLEEVEC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The crystal structure of human ABL2 in complex with GLEEVEC

Salah, E.Ugochukwu, E.Barr, A.Mahajan, P.Shrestha, B.Savitsky, P.Knapp, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Tyrosine-protein kinase ABL2A292Homo sapiensMutation(s): 0 
Gene Names: ABL2ABLLARG
EC: 2.7.10.2
UniProt & NIH Common Fund Data Resources
Find proteins for P42684 (Homo sapiens)
Explore P42684 
Go to UniProtKB:  P42684
PHAROS:  P42684
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
STI
Query on STI

Download Ideal Coordinates CCD File 
B [auth A], C [auth A]4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE
C29 H31 N7 O
KTUFNOKKBVMGRW-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
STIKd:  8.5   nM  BindingDB
STIIC50:  98   nM  BindingDB
STIIC50:  110   nM  BindingDB
STIIC50:  1.100000023841858   nM  BindingDB
STIIC50:  74   nM  BindingDB
STIKd:  1.7999999523162842   nM  BindingDB
STIEC50:  1000   nM  BindingDB
STIKi:  37   nM  BindingDB
STIKd:  2.5   nM  BindingDB
STIEC50:  90   nM  BindingDB
STIIC50:  8600   nM  BindingDB
STIIC50:  40   nM  BindingDB
STIKd:  10000   nM  BindingDB
STIIC50:  38   nM  BindingDB
STIKd:  5.900000095367432   nM  BindingDB
STIKd:  35   nM  BindingDB
STIKd:  8.300000190734863   nM  BindingDB
STIKd:  24   nM  BindingDB
STIKd:  6200   nM  BindingDB
STIKi:  298   nM  BindingDB
STIIC50:  20   nM  BindingDB
STIKd:  21   nM  BindingDB
STIIC50:  2700   nM  BindingDB
STIIC50:  13   nM  BindingDB
STIKd:  14   nM  BindingDB
STIIC50:  3100   nM  BindingDB
STIIC50:  14   nM  BindingDB
STIIC50:  1900   nM  BindingDB
STIKd:  12   nM  BindingDB
STIKd:  130   nM  BindingDB
STIKd:  110   nM  BindingDB
STIKd:  2.200000047683716   nM  BindingDB
STIKd:  92   nM  BindingDB
STIKd:  1   nM  BindingDB
STIIC50:  1100   nM  BindingDB
STIKd:  77   nM  BindingDB
STIIC50:  272   nM  BindingDB
STIIC50:  678   nM  BindingDB
STIIC50:  682   nM  BindingDB
STIIC50:  1000   nM  BindingDB
STIKd:  65   nM  BindingDB
STIIC50:  658   nM  BindingDB
STIKd:  62   nM  BindingDB
STIIC50:  750   nM  BindingDB
STIIC50:  730   nM  BindingDB
STIIC50:  470   nM  BindingDB
STIIC50:  473   nM  BindingDB
STIKd:  1.100000023841858   nM  BindingDB
STIIC50:  10.800000190734863   nM  BindingDB
STIKd:  44   nM  BindingDB
STIKd :  10   nM  PDBBind
STIIC50:  340   nM  BindingDB
STIKd:  10   nM  BindingDB
STIEC50:  70   nM  BindingDB
STIKi:  7000   nM  BindingDB
STIIC50:  372   nM  BindingDB
STIKd:  580   nM  BindingDB
STIIC50:  399   nM  BindingDB
STIIC50:  436   nM  BindingDB
STIKd:  13   nM  BindingDB
STIIC50:  430   nM  BindingDB
STIIC50:  234   nM  BindingDB
STIIC50:  250   nM  BindingDB
STIIC50:  319   nM  BindingDB
STIIC50:  300   nM  BindingDB
STIIC50:  170   nM  BindingDB
STIIC50:  188   nM  BindingDB
STIIC50:  190   nM  BindingDB
STIKi:  14   nM  BindingDB
STIIC50:  204   nM  BindingDB
STIIC50:  194   nM  BindingDB
STIIC50:  200   nM  BindingDB
STIIC50:  221   nM  BindingDB
STIIC50:  223   nM  BindingDB
STIEC50:  34   nM  BindingDB
STIIC50:  116   nM  BindingDB
STIKi:  13   nM  BindingDB
STIKd:  170   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 88.46α = 90
b = 99.44β = 90
c = 87.81γ = 90
Software Package:
Software NamePurpose
MAR345data collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2009-04-21
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description