3GUU | pdb_00003guu

X-ray structure of Candida Antarctica lipase A

• PDB DOI: https://doi.org/10.2210/pdb3GUU/pdb

• Classification: HYDROLASE
• Organism(s): Moesziomyces antarcticus
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2009-03-30 Released: 2010-03-31 
• Deposition Author(s): Brandt, A.-M., Li, X.-G., Nymalm-Rejstrom, Y., Airenne, T., Kanerva, L.T., Salminen, T.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.234 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.189 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.191 (Depositor) 

Starting Model: experimental

Literature

The crystal structure of Lipase A from Candida antarctica

Brandt, A.-M., Li, X.-G., Nymalm-Rejstrom, Y., Airenne, T., Kanerva, L.T., Salminen, T.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 99.36 kDa 
• Atom Count: 7,077 
• Modeled Residue Count: 862 
• Deposited Residue Count: 924 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipase A	A, B	462	Moesziomyces antarcticus	Mutation(s): 0  EC: 3.1.1.3 Membrane Entity: Yes
UniProt
Find proteins for W3VKA4 (Moesziomyces aphidis) Explore W3VKA4  Go to UniProtKB:  W3VKA4

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
1PE	C [auth A], E [auth B]	PENTAETHYLENE GLYCOL C10 H22 O6 JLFNLZLINWHATN-UHFFFAOYSA-N
SO4	F [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	D [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.234 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.189 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.191 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.1	α = 90
b = 92.1	β = 90
c = 300.4	γ = 90

Software Package:

Software Name	Purpose
XDS	data scaling
PHASER	phasing
REFMAC	refinement
INTEGRATE	data reduction
XSCALE	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-03-31 
Deposition Author(s): Brandt, A.-M., Li, X.-G., Nymalm-Rejstrom, Y., Airenne, T., Kanerva, L.T., Salminen, T.A.

Revision History  

• Version 1.0: 2010-03-31
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.3: 2024-10-16
  Changes: Structure summary