3GUU | pdb_00003guu

X-ray structure of Candida Antarctica lipase A

PDB DOI: https://doi.org/10.2210/pdb3GUU/pdb

Classification: HYDROLASE
Organism(s): Moesziomyces antarcticus
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2009-03-30 Released: 2010-03-31
Deposition Author(s): Brandt, A.-M., Li, X.-G., Nymalm-Rejstrom, Y., Airenne, T., Kanerva, L.T., Salminen, T.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.234 (Depositor), 0.234 (DCC)
R-Value Work:
0.189 (Depositor), 0.196 (DCC)
R-Value Observed:
0.191 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

The crystal structure of Lipase A from Candida antarctica

Brandt, A.-M., Li, X.-G., Nymalm-Rejstrom, Y., Airenne, T., Kanerva, L.T., Salminen, T.A.

To be published.

Macromolecule Content

Total Structure Weight: 99.36 kDa
Atom Count: 7,077
Modeled Residue Count: 862
Deposited Residue Count: 924
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipase A	A, B	462	Moesziomyces antarcticus	Mutation(s): 0 EC: 3.1.1.3 Membrane Entity: Yes
UniProt
Find proteins for W3VKA4 (Moesziomyces aphidis) Explore W3VKA4 Go to UniProtKB: W3VKA4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	W3VKA4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1PE Query on 1PE Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain E [auth B] MOL2 format, chain C [auth A] MOL2 format, chain E [auth B] mmCIF format, chain C [auth A] mmCIF format, chain E [auth B]	C [auth A], E [auth B]	PENTAETHYLENE GLYCOL C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain E [auth B] Interactions & Density Focus chain C [auth A] Focus chain E [auth B]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain F [auth B] MOL2 format, chain F [auth B] mmCIF format, chain F [auth B]	F [auth B]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain F [auth B] Interactions & Density Focus chain F [auth B]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A] mmCIF format, chain D [auth A]	D [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.234 (Depositor), 0.234 (DCC)
R-Value Work: 0.189 (Depositor), 0.196 (DCC)
R-Value Observed: 0.191 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 92.1	α = 90
b = 92.1	β = 90
c = 300.4	γ = 90

Software Package:

Software Name	Purpose
XDS	data scaling
PHASER	phasing
REFMAC	refinement
INTEGRATE	data reduction
XSCALE	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-03-31

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-03-31
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
Version 1.3: 2024-10-16
Changes: Structure summary

3GUU | pdb_00003guu

X-ray structure of Candida Antarctica lipase A

Literature

The crystal structure of Lipase A from Candida antarctica

Biological Assembly 1

Biological Assembly 2

Macromolecules

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

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