Download MendeleyX-ray crystal structure of transcriptional regulator (MarR family) from Rhodococcus sp. RHA1
Nocek, B., Xu, X., Zheng, H., Savchenko, A., Edwards, A.M., Joachimiak, A.To be published.
3FM5
X-ray crystal structure of transcriptional regulator (MarR family) from Rhodococcus sp. RHA1
- DOI: 10.2210/pdb3FM5/pdb
- Classification: TRANSCRIPTION REGULATOR
- Organism(s): Rhodococcus jostii RHA1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-12-19 Released: 2009-02-03
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.240
- R-Value Work: 0.194
- R-Value Observed: 0.196
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transcriptional regulator | A, B, C, D | 150 | Rhodococcus jostii RHA1 | Mutation(s): 0 Gene Names: RHA1_ro05125 |  |
Find proteins for Q0S6D0 (Rhodococcus jostii (strain RHA1)) Explore Q0S6D0 Go to UniProtKB: Q0S6D0 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | E [auth A], H [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | F [auth B], J [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | I [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| MG Query on MG | G [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.240
- R-Value Work: 0.194
- R-Value Observed: 0.196
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.114 | α = 90 |
| b = 75.114 | β = 90 |
| c = 213.61 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-3000 | phasing |
| SHELXD | phasing |
| Coot | model building |
| MLPHARE | phasing |
| PHENIX | model building |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHENIX | phasing |
Entry History
Deposition Data
- Deposited Date: 2008-12-19
- Released Date: 2009-02-03 Deposition Author(s): Nocek, B., Xu, X., Zheng, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2009-02-03
Type: Initial release - Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
