X-ray crystal structure of transcriptional regulator (MarR family) from Rhodococcus sp. RHA1
Nocek, B., Xu, X., Zheng, H., Savchenko, A., Edwards, A.M., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transcriptional regulator | A, B, C, D | 150 | Rhodococcus jostii RHA1 | Mutation(s): 0  Gene Names: RHA1_ro05125 | ![]() |
UniProt | |||||
Find proteins for Q0S6D0 (Rhodococcus jostii (strain RHA1)) Explore Q0S6D0  Go to UniProtKB:  Q0S6D0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q0S6D0 | ||||
Protein Feature ViewExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | E [auth A], H [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction | ||
EDO Query on EDO | F [auth B], J [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction | ||
CL Query on CL | I [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | Ligand Interaction | ||
MG Query on MG | G [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 75.114 | α = 90 |
b = 75.114 | β = 90 |
c = 213.61 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | phasing |
SHELXD | phasing |
Coot | model building |
MLPHARE | phasing |
PHENIX | model building |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHENIX | phasing |