Download MendeleyCrystal structure of phosphoserine aminotransferase SerC (EC 2.6.1.52) (YP_677612.1) from CYTOPHAGA HUTCHINSONII ATCC 33406 at 1.75 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3FFR
CRYSTAL STRUCTURE OF A PHOSPHOSERINE AMINOTRANSFERASE SERC (CHU_0995) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 1.75 A RESOLUTION
- PDB DOI: 10.2210/pdb3FFR/pdb
- Classification: TRANSFERASE
- Organism(s): Cytophaga hutchinsonii ATCC 33406
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-12-04 Released: 2008-12-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.162
- R-Value Work: 0.143
- R-Value Observed: 0.144
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Phosphoserine aminotransferase SerC | A | 362 | Cytophaga hutchinsonii ATCC 33406 | Mutation(s): 0 Gene Names: CHU_0995, serC, YP_677612.1 EC: 2.6.1.52 |  |
UniProt | |||||
Find proteins for A0A6N4SPK8 (Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465)) Explore A0A6N4SPK8 Go to UniProtKB: A0A6N4SPK8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A6N4SPK8 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| P33 Query on P33 | C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N |  | Ligand Interaction | |
| SER Query on SER | B [auth A] | SERINE C3 H7 N O3 MTCFGRXMJLQNBG-REOHCLBHSA-N |  | Ligand Interaction | |
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| LLP Query on LLP | A | L-PEPTIDE LINKING | C14 H22 N3 O7 P |  | LYS |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.162
- R-Value Work: 0.143
- R-Value Observed: 0.144
- Space Group: P 31 2 1
- Diffraction Data DOI: 10.18430/M33FFR Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.23 | α = 90 |
| b = 79.23 | β = 90 |
| c = 144.59 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHELX | phasing |
| MolProbity | model building |
| XSCALE | data scaling |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
Entry History
Deposition Data
- Deposited Date: 2008-12-04
- Released Date: 2008-12-23 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-12-23
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2017-11-01
Changes: Advisory, Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Derived calculations, Refinement description
