Download MendeleyCrystal structure of protein of unknown function (DUF1255) (AFE_2634) from ACIDITHIOBACILLUS FERROOXIDANS NCIB8455 at 0.97 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3EO6
Crystal structure of protein of unknown function (DUF1255) (AFE_2634) from ACIDITHIOBACILLUS FERROOXIDANS NCIB8455 at 0.97 A resolution
- PDB DOI: 10.2210/pdb3EO6/pdb
- Classification: structural genomics, unknown function
- Organism(s): Acidithiobacillus ferrooxidans ATCC 23270
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-09-26 Released: 2008-10-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.97 Å
- R-Value Free: 0.143
- R-Value Work: 0.123
- R-Value Observed: 0.124
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| protein of unknown function (DUF1255) | A, B | 106 | Acidithiobacillus ferrooxidans ATCC 23270 | Mutation(s): 0 Gene Names: AFE_2634 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TRS Query on TRS | E [auth B] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O |  | Ligand Interaction | |
| MG Query on MG | C [auth A], D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.97 Å
- R-Value Free: 0.143
- R-Value Work: 0.123
- R-Value Observed: 0.124
- Space Group: P 1 21 1
- Diffraction Data DOI: 10.18430/M33EO6
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 30.785 | α = 90 |
| b = 82.028 | β = 109.95 |
| c = 40.847 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHENIX | refinement |
| SHARP | phasing |
| MolProbity | model building |
| SCALA | data scaling |
| PDB_EXTRACT | data extraction |
| MOSFLM | data reduction |
Entry History
Deposition Data
- Released Date: 2008-10-07 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-10-07
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-10-25
Changes: Refinement description - Version 1.3: 2019-07-24
Changes: Data collection, Database references, Derived calculations, Refinement description
