Download MendeleyCrystal structure of cppA protein from Streptococcus pneumoniae TIGR4
Nocek, B., Mulligan, R., Abdullah, S., Otwinowski, Z., Joachimiak, A.To be published.
3E0R
Crystal structure of cppA protein from Streptococcus pneumoniae TIGR4
- PDB DOI: 10.2210/pdb3E0R/pdb
- Classification: HYDROLASE
- Organism(s): Streptococcus pneumoniae
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-07-31 Released: 2008-08-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.256
- R-Value Work: 0.189
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| C3-degrading proteinase (CppA protein) | A, B, C, D | 244 | Streptococcus pneumoniae | Mutation(s): 0 Gene Names: cppA, SP_1449, GM527_02505, GM547_06665 |  |
UniProt | |||||
Find proteins for Q9X4I9 (Streptococcus pneumoniae) Explore Q9X4I9 Go to UniProtKB: Q9X4I9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9X4I9 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | E [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B, C, D | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.256
- R-Value Work: 0.189
- R-Value Observed: 0.193
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 114.742 | α = 90 |
| b = 130.741 | β = 90 |
| c = 91.535 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
| SHELX | phasing |
| Coot | model building |
| MLPHARE | phasing |
| PHENIX | phasing |
| REFMAC | phasing |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2008-08-19 Deposition Author(s): Nocek, B., Mulligan, R., Abdullah, J., Otwinowski, Z., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
Revision History (Full details and data files)
- Version 1.0: 2008-08-19
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
