X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82910.01M sodium citrate 33% PEG 6000, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
3.0759.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.742α = 90
b = 130.741β = 90
c = 91.535γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-3mirrors2007-11-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.9794APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.34097.70.1519.54.463993622502
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3483.40.55523.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.3406008057016306497.170.19220.192770.189340.25632RANDOM20.228
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.91-1.15-1.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.115
r_dihedral_angle_4_deg18.796
r_dihedral_angle_3_deg16.961
r_dihedral_angle_1_deg7.571
r_scangle_it3.077
r_scbond_it2.204
r_angle_refined_deg1.758
r_mcangle_it1.291
r_angle_other_deg1.007
r_mcbond_it1.005
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.115
r_dihedral_angle_4_deg18.796
r_dihedral_angle_3_deg16.961
r_dihedral_angle_1_deg7.571
r_scangle_it3.077
r_scbond_it2.204
r_angle_refined_deg1.758
r_mcangle_it1.291
r_angle_other_deg1.007
r_mcbond_it1.005
r_symmetry_vdw_other0.286
r_symmetry_vdw_refined0.269
r_nbd_other0.203
r_nbd_refined0.197
r_mcbond_other0.188
r_xyhbond_nbd_refined0.187
r_nbtor_refined0.174
r_symmetry_hbond_refined0.169
r_chiral_restr0.1
r_nbtor_other0.091
r_bond_refined_d0.02
r_gen_planes_refined0.006
r_xyhbond_nbd_other0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7602
Nucleic Acid Atoms
Solvent Atoms549
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
SHELXphasing
Cootmodel building
MLPHAREphasing
PHENIXphasing
REFMACphasing
ARP/wARPmodel building