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Download EndnoteCrystal structure of Stress response protein yhaX from Bacillus subtilis
Chang, C., Tesar, C., Jedrzejczak, R., Joachimiak, A.To be published.
3DNP
Crystal structure of Stress response protein yhaX from Bacillus subtilis
- DOI: 10.2210/pdb3DNP/pdb
- Classification: structural genomics unknown function
- Organism(s): Bacillus subtilis (strain 168)
- Expression System: Escherichia coli
- Deposited: 2008-07-02 Released: 2008-07-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.207
- R-Value Work: 0.167
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Stress response protein yhaX | A | 290 | Bacillus subtilis (strain 168) | Mutation(s): 0 Gene Names: yhaX |
Find proteins for O07539 (Bacillus subtilis (strain 168)) Go to UniProtKB: O07539 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | A | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.85 Å
- R-Value Free: 0.207
- R-Value Work: 0.167
- Space Group: P 43 21 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 63.939 | α = 90.00 |
| b = 63.939 | β = 90.00 |
| c = 161.485 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| REFMAC | refinement |
| HKL-3000 | phasing |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2008-07-02
- Released Date: 2008-07-29
- Deposition Author(s): Chang, C., Tesar, C., Jedrzejczak, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
