Macromolecule Content

Total Structure Weight: 65474.58
Atom Count: 4437
Residue Count: 566
Unique protein chains: 1

3DAO

CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHATE (EUBREC_1417) FROM EUBACTERIUM RECTALE AT 1.80 A RESOLUTION

DOI: 10.2210/pdb3DAO/pdb

Classification: HYDROLASE
Organism(s): [Eubacterium] rectale
Expression System: Escherichia coli

Deposited: 2008-05-29 Released: 2008-07-29
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.8 Å
R-Value Free: 0.208
R-Value Work: 0.168

wwPDB Validation3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of a Putative Phosphatase (RER070207001050) from Eubacterium rectale at 1.80 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Putative Phosphate	A, B	283	[Eubacterium] rectale
Find proteins for D0VWU2 ([Eubacterium] rectale) Go to UniProtKB: D0VWU2
Protein Feature View Full Protein Feature View for D0VWU2

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
CIT Query on CIT Download SDF File Download CCD File	B	CITRIC ACID C₆ H₈ O₇ KRKNYBCHXYNGOX-UHFFFAOYSA-N		Ligand Interaction
1PE Query on 1PE Download SDF File Download CCD File	A	PENTAETHYLENE GLYCOL PEG400 C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.8 Å
R-Value Free: 0.208
R-Value Work: 0.168
Space Group: P 4₁ 2₁ 2
Diffraction Data DOI:
10.18430/M33DAO Protein Diffraction

Unit Cell:

Length (Å)	Angle (°)
a = 101.855	α = 90.00
b = 101.855	β = 90.00
c = 110.994	γ = 90.00

Software Package:

Software Name	Purpose
MolProbity	model building
MOSFLM	data reduction
autoSHARP	phasing
PHENIX	refinement
SHELX	phasing
REFMAC	refinement
SCALA	data scaling
SHELXD	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2008-05-29
Released Date: 2008-07-29
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Revision History

Version 1.0: 2008-07-29
Type: Initial release
Version 1.1: 2011-07-13
Type: Version format compliance
Version 1.2: 2017-10-25
Type: Refinement description

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.