3CVU

Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.185 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure and mechanism of a DNA (6-4) photolyase.

Maul, M.J.Barends, T.R.Glas, A.F.Cryle, M.J.Domratcheva, T.Schneider, S.Schlichting, I.Carell, T.

(2008) Angew Chem Int Ed Engl 47: 10076-10080


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
RE11660p A543Drosophila melanogasterMutation(s): 0 
Gene Names: phr64-520phr6-4CG2488
Find proteins for Q8SXK5 (Drosophila melanogaster)
Explore Q8SXK5 
Go to UniProtKB:  Q8SXK5
Protein Feature View
Expand
  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3')C15N/A
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 2
      MoleculeChainsLengthOrganismImage
      DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3')D15N/A
      Small Molecules
      Ligands 1 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      FAD
      Query on FAD

      Download Ideal Coordinates CCD File 
      A
      FLAVIN-ADENINE DINUCLEOTIDE
      C27 H33 N9 O15 P2
      VWWQXMAJTJZDQX-UYBVJOGSSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 2.00 Å
      • R-Value Free: 0.212 
      • R-Value Work: 0.184 
      • R-Value Observed: 0.185 
      • Space Group: P 21 21 21
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 86.948α = 90
      b = 89.385β = 90
      c = 91.251γ = 90
      Software Package:
      Software NamePurpose
      REFMACrefinement
      MAR345data collection
      XDSdata reduction
      XSCALEdata scaling
      REFMACphasing

      Structure Validation

      View Full Validation Report



      Entry History 

      Deposition Data

      Revision History 

      • Version 1.0: 2008-11-04
        Type: Initial release
      • Version 1.1: 2011-07-13
        Changes: Version format compliance
      • Version 1.2: 2017-10-25
        Changes: Refinement description