3CBW

Crystal structure of the YdhT protein from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.269 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.149 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of the YdhT protein from Bacillus subtilis.

Bonanno, J.B.Rutter, M.Bain, K.T.Iizuka, M.Romero, R.Smith, D.Wasserman, S.Sauder, J.M.Burley, S.K.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
YdhT protein
A, B
353Bacillus subtilis (strain 168)Mutation(s): 3 
Gene Names: gmuG (ydhT)
EC: 3.2.1.78
Find proteins for O05512 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O05512
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CIT
Query on CIT

Download SDF File 
Download CCD File 
B
CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.269 Å
  • R-Value Free: 0.172 
  • R-Value Work: 0.149 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 57.728α = 90.00
b = 69.619β = 91.09
c = 72.505γ = 90.00
Software Package:
Software NamePurpose
MAR345data collection
SCALAdata scaling
PDB_EXTRACTdata extraction
REFMACrefinement
MOSFLMdata reduction
SHELXEmodel building
SHELXCDphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-03-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-10-25
    Type: Refinement description
  • Version 1.3: 2018-11-14
    Type: Data collection, Structure summary