3C0F

Crystal Structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source

PDB DOI: https://doi.org/10.2210/pdb3C0F/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Archaeoglobus fulgidus DSM 4304
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2008-01-20 Released: 2008-02-05
Deposition Author(s): Li, Y., Bahti, P., Shaw, N., Song, G., Yin, J., Zhu, J.-Y., Zhang, H., Xu, H., Wang, B.-C., Liu, Z.-J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.226
R-Value Work: 0.206
R-Value Observed: 0.207

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source.

Li, Y., Bahti, P., Shaw, N., Song, G., Chen, S., Zhang, X., Zhang, M., Cheng, C., Yin, J., Zhu, J.Y., Zhang, H., Che, D., Xu, H., Abbas, A., Wang, B.C., Liu, Z.J.

(2008) Proteins 71: 2109-2113

PubMed: 18361456 Search on PubMed
DOI: https://doi.org/10.1002/prot.22025
Primary Citation of Related Structures:
3C0F

Macromolecule Content

Total Structure Weight: 10.65 kDa
Atom Count: 803
Modelled Residue Count: 85
Deposited Residue Count: 91
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein AF_1514	A [auth B]	91	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0 Gene Names: AF1514, AF_1514
UniProt
Find proteins for O28758 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28758 Go to UniProtKB: O28758
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O28758
Protein Feature View Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLY Query on MLY	A [auth B]	L-PEPTIDE LINKING	C₈ H₁₈ N₂ O₂		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.226
R-Value Work: 0.206
R-Value Observed: 0.207
Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.737	α = 90
b = 49.737	β = 90
c = 106.462	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHARP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-02-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-02-05
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.