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Crystal Structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291 0.1 M sodium chloride, 0.1 M sodium acetate trihydrate, 10 % v/v MPD, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.09 60.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.737 α = 90 b = 49.737 β = 90 c = 106.462 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2007-11-12 M SINGLE WAVELENGTH 2 1 IMAGE PLATE RIGAKU RAXIS IV++ 2007-11-18
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 2 ROTATING ANODE RIGAKU MICROMAX-007 2.29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.08 91.4 0.041 0.042 46.2 9.2 13109 11982 1.7 1.74 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 58 0.215 0.216 4.8 2.5 735
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 45.08 1.8 1.8 13109 11347 575 91.27 0.20652 0.20554 0.22647 RANDOM 19.372
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.65 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.942 r_dihedral_angle_4_deg 15.08 r_dihedral_angle_3_deg 10.344 r_dihedral_angle_1_deg 5.217 r_scangle_it 1.058 r_angle_refined_deg 1.009 r_scbond_it 0.698 r_mcangle_it 0.49 r_nbtor_refined 0.307 r_mcbond_it 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.942 r_dihedral_angle_4_deg 15.08 r_dihedral_angle_3_deg 10.344 r_dihedral_angle_1_deg 5.217 r_scangle_it 1.058 r_angle_refined_deg 1.009 r_scbond_it 0.698 r_mcangle_it 0.49 r_nbtor_refined 0.307 r_mcbond_it 0.28 r_nbd_refined 0.171 r_symmetry_vdw_refined 0.158 r_symmetry_hbond_refined 0.073 r_xyhbond_nbd_refined 0.064 r_chiral_restr 0.058 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 682 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing