3ZYH

CRYSTAL STRUCTURE OF PA-IL LECTIN COMPLEXED WITH GALBG0 AT 1.5 A RESOLUTION


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.186 

wwPDB Validation 3D Report Full Report


This is version 1.9 of the entry. See complete history


Literature

A Glycopeptide Dendrimer Inhibitor of the Galactose Specific Lectin Leca and of Pseudomonas Aeruginosa Biofilms

Kadam, R.U.Bergmann, M.Hurley, M.Garg, D.Cacciarini, M.Swiderska, M.A.Nativi, C.Sattler, M.Smyth, A.R.Williams, P.Camara, M.Stocker, A.Darbre, T.Reymond, J.-L.

(2011) Angew Chem Int Ed Engl 50: 10631


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PA-I galactophilic lectinAB122Pseudomonas aeruginosa PAO1Mutation(s): 0 
Gene Names: lecApa1LPA2570
Find proteins for Q05097 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
Explore Q05097 
Go to UniProtKB:  Q05097
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
G0S
Query on G0S

Download CCD File 
A, B
3-(beta-D-galactopyranosylthio)propanoic acid
C9 H16 O7 S
XMQYQVUZHDCFEM-MRCFXUCSSA-N
 Ligand Interaction
CA
Query on CA

Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.202 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.186 
  • Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.559α = 90
b = 72.865β = 90
c = 133.723γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-09-21
    Type: Initial release
  • Version 1.1: 2011-09-28
    Changes: Database references
  • Version 1.2: 2011-10-05
    Changes: Atomic model, Other
  • Version 1.3: 2011-10-26
    Changes: Atomic model
  • Version 1.4: 2011-11-16
    Changes: Database references
  • Version 1.5: 2012-11-30
    Changes: Other
  • Version 1.6: 2015-09-16
    Changes: Source and taxonomy
  • Version 1.7: 2017-08-02
    Changes: Structure summary
  • Version 1.8: 2019-10-02
    Changes: Data collection, Derived calculations, Experimental preparation, Other
  • Version 1.9: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations