3ZXY

Structure of S218A mutant of the protease domain of PatA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.156 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

The Discovery of New Cyanobactins from Cyanothece Pcc 7425 Defines a New Signature for Processing of Patellamides.

Houssen, W.E.Koehnke, J.Zollman, D.Vendome, J.Raab, A.Smith, M.C.Naismith, J.H.Jaspars, M.

(2012) Chembiochem 13: 2683

  • DOI: https://doi.org/10.1002/cbic.201200661
  • Primary Citation of Related Structures:  
    3ZXX, 3ZXY

  • PubMed Abstract: 

    Cyanobactins, including patellamides, are a group of cyanobacterial post-translationally modified ribosomal cyclic peptides. The final product should in theory be predictable from the sequence of the precursor peptide and the associated tailoring enzymes. Understanding the mechanism and recognition requirements of these enzymes will allow their rational engineering. We have identified three new cyanobactins from a Cyanothece PCC 7425 culture subjected to a heat shock. One of these compounds revealed a novel signature signal for ThcA, the subtilisin-like serine protease that is homologous to the patellamide protease PatA. The crystal structure of the latter and modelling studies allow rationalisation of the recognition determinants for both enzymes, consistent with the ribosomal biosynthetic origin of the new compounds.


  • Organizational Affiliation

    Marine Biodiscovery Centre, Department of Chemistry, University of Aberdeen, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
SUBTILISIN-LIKE PROTEIN282Prochloron didemniMutation(s): 1 
UniProt
Find proteins for Q52QI9 (Prochloron didemni)
Explore Q52QI9 
Go to UniProtKB:  Q52QI9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ52QI9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.58 Å
  • R-Value Free: 0.174 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.156 
  • Space Group: I 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 130.61α = 90
b = 130.61β = 90
c = 130.61γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-08-29
    Type: Initial release
  • Version 1.1: 2012-12-05
    Changes: Database references
  • Version 1.2: 2013-01-16
    Changes: Database references
  • Version 1.3: 2013-11-06
    Changes: Structure summary
  • Version 1.4: 2023-12-20
    Changes: Data collection, Database references, Other, Refinement description