3ZSC

Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Catalytic Function and Substrate Recognition of the Pectate Lyase from Thermotoga Maritima

McDonough, M.A.Thymark, M.Frisner, H.Hotchkiss, A.Sonksen, C.Bjornvad, M.Johansen, K.S.Larsen, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PECTATE TRISACCHARIDE-LYASE
A
340Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)Mutation(s): 3 
Gene Names: pelA
EC: 4.2.2.22
Find proteins for Q9WYR4 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099))
Go to UniProtKB:  Q9WYR4
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
AQA
Query on AQA

Download SDF File 
Download CCD File 
A
4-DEOXY-BETA-L-THREO-HEX-4-ENOPYRANURONIC ACID
C6 H8 O6
IAKKJSVSFCTLRY-DJSBZWDSSA-N
 Ligand Interaction
ADA
Query on ADA

Download SDF File 
Download CCD File 
A
ALPHA-D-GALACTOPYRANURONIC ACID
ALPHA D-GALACTURONIC ACID
C6 H10 O7
AEMOLEFTQBMNLQ-BKBMJHBISA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.179 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 80.602α = 90.00
b = 80.602β = 90.00
c = 148.819γ = 120.00
Software Package:
Software NamePurpose
EPMRphasing
DENZOdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-07-11
    Type: Initial release
  • Version 1.1: 2018-02-21
    Type: Database references