3ZP1

INFLUENZA VIRUS (VN1194) H5 HA with LSTc

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.223 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Changes in the Hemagglutinin of H5N1 Viruses During Human Infection - Influence on Receptor Binding.

Crusat, M., Liu, J., Palma, A.S., Childs, R.A., Liu, Y., Wharton, S.A., Lin, Y.P., Coombs, P.J., Martin, S.R., Matrosovich, M., Chen, Z., Stevens, D.J., Hien, V.M., Thanh, T.T., Nhu, L.N.T., Nguyet, L.A., Ha, D.Q., Van Doorn, H.R., Hien, T.T., Conradt, H.S., Kiso, M., Gamblin, S.J., Chai, W., Skehel, J.J., Hay, A.J., Farrar, J., De Jong, M.D., Feizi, T.

(2013) Virology 447: 326

  • DOI: 10.1016/j.virol.2013.08.010
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 

    • As avian influenza A(H5N1) viruses continue to circulate in Asia and Africa, global concerns of an imminent pandemic persist. Recent experimental studies suggest that efficient transmission between humans of current H5N1 viruses only requires a few g ...

    As avian influenza A(H5N1) viruses continue to circulate in Asia and Africa, global concerns of an imminent pandemic persist. Recent experimental studies suggest that efficient transmission between humans of current H5N1 viruses only requires a few genetic changes. An essential step is alteration of the virus hemagglutinin from preferential binding to avian receptors for the recognition of human receptors present in the upper airway. We have identified receptor-binding changes which emerged during H5N1 infection of humans, due to single amino acid substitutions, Ala134Val and Ile151Phe, in the hemagglutinin. Detailed biological, receptor-binding, and structural analyses revealed reduced binding of the mutated viruses to avian-like receptors, but without commensurate increased binding to the human-like receptors investigated, possibly reflecting a receptor-binding phenotype intermediate in adaptation to more human-like characteristics. These observations emphasize that evolution in nature of avian H5N1 viruses to efficient binding of human receptors is a complex multistep process.

    Organizational Affiliation: 

    Oxford University Clinical Research Unit, Hospital for Tropical Diseases, Ho Chi Minh City, Vietnam; Department of Medical Microbiology, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HAEMAGGLUTININ
E
326Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for Q6DQ34 (Influenza A virus)
Go to UniProtKB:  Q6DQ34
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HAEMAGGLUTININ
F
166Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for Q6DQ34 (Influenza A virus)
Go to UniProtKB:  Q6DQ34
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GAL
Query on GAL
Download SDF File 
Download CCD File 
E
BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
 Ligand Interaction
SIA
Query on SIA
Download SDF File 
Download CCD File 
E
O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.223 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 101.090α = 90.00
b = 101.090β = 90.00
c = 448.460γ = 120.00
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-10-02
    Type: Initial release
  • Version 1.1: 2013-11-20
    Type: Database references