3ZNK

H5 Haemagglutinin in Complex with 6-O-Sulfo-2,3-Sialyllactosamine (Sulfated 3'SLN)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Recognition of Sulphated and Fucosylated Receptor Sialosides by A/Vietnam/1194/2004 (H5N1) Influenza Virus.

Xiong, X.Tuzikov, A.Coombs, P.Martin, S.Walker, P.A.Gamblin, S.J.Bovin, N.Skehel, J.J.

(2013) Virus Res. 178: 12


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HAEMAGGLUTININ
A, C, E
326Influenza A virusMutation(s): 0 
Gene Names: HA
Find proteins for Q6DQ34 (Influenza A virus)
Go to UniProtKB:  Q6DQ34
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HAEMAGGLUTININ
B, D, F
166Influenza A virus (strain A/Hong Kong/212/2003 H5N1 genotype Z+)Mutation(s): 0 
Gene Names: HA
Find proteins for Q6J8F6 (Influenza A virus (strain A/Hong Kong/212/2003 H5N1 genotype Z+))
Go to UniProtKB:  Q6J8F6
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NGS
Query on NGS

Download SDF File 
Download CCD File 
A, C, E
2-(acetylamino)-2-deoxy-6-O-sulfo-beta-D-glucopyranose
N-ACETYL-D-GLUCOSAMINE-6-SULFATE
C8 H15 N O9 S
WJFVEEAIYIOATH-FMDGEEDCSA-N
 Ligand Interaction
EPE
Query on EPE

Download SDF File 
Download CCD File 
B, D, F
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E, F
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
GLA
Query on GLA

Download SDF File 
Download CCD File 
A, C, E
ALPHA D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-PHYPRBDBSA-N
 Ligand Interaction
SIA
Query on SIA

Download SDF File 
Download CCD File 
A, C, E
O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.222 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 175.340α = 90.00
b = 101.230β = 111.31
c = 160.800γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
PHASERphasing
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-09-25
    Type: Initial release
  • Version 1.1: 2013-11-27
    Type: Database references