3X43

Crystal structure of O-ureido-L-serine synthase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.209 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The structural and mutational analyses of O-ureido-L-serine synthase necessary for D-cycloserine biosynthesis

Uda, N.Matoba, Y.Oda, K.Kumagai, T.Sugiyama, M.

(2015) Febs J. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
O-ureido-L-serine synthase
A, B, C, D, E, F, G, H
332Streptomyces lavendulaeMutation(s): 0 
Gene Names: dcsD
EC: 2.6.99.3
Find proteins for D2Z027 (Streptomyces lavendulae)
Go to UniProtKB:  D2Z027
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PLP
Query on PLP

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.209 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 72.480α = 90.00
b = 154.130β = 90.48
c = 118.520γ = 90.00
Software Package:
Software NamePurpose
CNSrefinement
SCALAdata scaling
MOLREPphasing
MOSFLMdata reduction
BSSdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-07-29
    Type: Initial release
  • Version 1.1: 2015-08-12
    Type: Database references