3WWX

Crystal structure of D-stereospecific amidohydrolase from Streptomyces sp. 82F2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.162 
  • R-Value Work: 0.141 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of D-stereospecific amidohydrolase from Streptomyces sp. 82F2: insight into the structural factors for substrate specificity

Arima, J.Shimone, K.Miyatani, K.Tsunehara, Y.Isoda, Y.Hino, T.Nagano, S.

(2015) Febs J. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
S12 family peptidase
A
349Streptomyces sp. 82F2Mutation(s): 0 
Gene Names: s12ap
Find proteins for E2RVJ1 (Streptomyces sp. 82F2)
Go to UniProtKB:  E2RVJ1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DIA
Query on DIA

Download SDF File 
Download CCD File 
A
OCTANE 1,8-DIAMINE
1,8-DIAMINOOCTANE; OCTAMETHYLENEDIAMINE; 1,8-OCTANEDIAMINE
C8 H20 N2
PWGJDPKCLMLPJW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.162 
  • R-Value Work: 0.141 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 59.290α = 90.00
b = 74.681β = 90.00
c = 76.447γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
BSSdata collection
PHASERphasing
PDB_EXTRACTdata extraction
DENZOdata reduction
HKL-2000data reduction
PHENIXrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-07-08
    Type: Initial release
  • Version 1.1: 2015-11-25
    Type: Database references
  • Version 1.2: 2017-11-22
    Type: Refinement description