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Download EndnoteCrystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins.
Masuda, T., Momoji, K., Hirata, T., Mikami, B.(2014) Febs J. --: --
- PubMed: 24720693
- DOI: 10.1111/febs.12812
3WKY
Crystal structure of hemolymph type prophenoloxidase (proPOb) from crustacean
- DOI: 10.2210/pdb3WKY/pdb
- Classification: OXIDOREDUCTASE ACTIVATOR
- Organism(s): Penaeus japonicus
- Deposited: 2013-11-02 Released: 2014-04-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.801 Å
- R-Value Free: 0.196
- R-Value Work: 0.175
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Prophenoloxidase b | A, B | 687 | Penaeus japonicus | Mutation(s): 0 Gene Names: proPOb |
Find proteins for G5EKM4 (Penaeus japonicus) Go to UniProtKB: G5EKM4 | ||||
Small Molecules
| Ligands 6 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NA Query on NA | A | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| CUO Query on CUO | A, B | CU2-O2 CLUSTER CU-O2-CU LINKAGE Cu2 O2 PCGDDKBKPXANNY-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | B | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| NAG Query on NAG | A, B | N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.801 Å
- R-Value Free: 0.196
- R-Value Work: 0.175
- Space Group: H 3
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 156.706 | α = 90.00 |
| b = 156.706 | β = 90.00 |
| c = 283.830 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| SOLVE | phasing |
| PHENIX | refinement |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2013-11-02
- Released Date: 2014-04-23
- Deposition Author(s): Masuda, T., Mikami, B.
Revision History
- Version 1.0: 2014-04-23
Type: Initial release
