3WJ5

Crystal structure of PPARgamma ligand binding domain in complex with triphenyltin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 

wwPDB Validation 3D Report Full Report



Literature

Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds

Harada, S.Hiromori, Y.Fukakusa, S.Kawahara, K.Nakamura, S.Noda, M.Uchiyama, S.Fukui, K.Nishikawa, J.Nagase, H.Kobayashi, Y.Ohkubo, T.Yoshida, T.Nakanishi, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxisome proliferator-activated receptor gamma
A, B
276Homo sapiensMutation(s): 0 
Gene Names: PPARGNR1C3
Find proteins for P37231 (Homo sapiens)
Go to UniProtKB:  P37231
NIH Common Fund Data Resources
PHAROS  P37231
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
T9T
Query on T9T

Download CCD File 
A, B
triphenylstannanyl
C18 H15 Sn
NFHRNKANAAGQOH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.203 
  • R-Value Observed: 0.205 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.521α = 90
b = 88.492β = 91.06
c = 57.943γ = 90
Software Package:
Software NamePurpose
ADSCdata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-10-15
    Type: Initial release
  • Version 2.0: 2019-06-12
    Changes: Atomic model, Data collection