3WJ4

Crystal structure of PPARgamma ligand binding domain in complex with tributyltin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis for PPARgamma transactivation by endocrine disrupting organotin compounds

Harada, S.Hiromori, Y.Fukakusa, S.Kawahara, K.Nakamura, S.Noda, M.Uchiyama, S.Fukui, K.Nishikawa, J.Nagase, H.Kobayashi, Y.Ohkubo, T.Yoshida, T.Nakanishi, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peroxisome proliferator-activated receptor gamma
A, B
276Homo sapiensMutation(s): 0 
Gene Names: PPARG (NR1C3)
Find proteins for P37231 (Homo sapiens)
Go to Gene View: PPARG
Go to UniProtKB:  P37231
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
TBY
Query on TBY

Download SDF File 
Download CCD File 
A, B
tributylstannanyl
tributyltin
C12 H27 Sn
DBGVGMSCBYYSLD-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.194 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 56.338α = 90.00
b = 88.286β = 90.68
c = 57.509γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
ADSCdata collection
MOLREPphasing
HKL-2000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-10-15
    Type: Initial release