3WIK

Crystal structure of the CK2alpha/compound10 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.995 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.163 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Identification of protein kinase CK2 inhibitors using solvent dipole ordering virtual screening

Nakanishi, I.Murata, K.Nagata, N.Kurono, M.Kinoshita, T.Yasue, M.Miyazaki, T.Hirasawa, A.Tsujimoto, G.Kitaura, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Casein kinase II subunit alpha
A
340Homo sapiensGene Names: CSNK2A1 (CK2A1)
EC: 2.7.11.1
Find proteins for P68400 (Homo sapiens)
Go to Gene View: CSNK2A1
Go to UniProtKB:  P68400
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
LCT
Query on LCT

Download SDF File 
Download CCD File 
A
N-[5-(4-nitrophenyl)-1,3,4-thiadiazol-2-yl]acetamide
C10 H8 N4 O3 S
KTJUGKNFZGGFIC-UHFFFAOYSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
LCTIC50: 26800 - 32200 nM (100) BINDINGDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.995 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.163 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.382α = 90.00
b = 79.451β = 90.00
c = 82.888γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
AMoREphasing
HKL-2000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-11-05
    Type: Initial release