3WHX

Crystal structure of anti-prostaglandin E2 Fab fragment PGE1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2

Sugahara, M.Ago, H.Saino, H.Miyano, M.Kurahashi, Y.Aoyama, S.Takehira, M.Yutani, K.Yamamoto, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
mAb Fab H fragment
A
218N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
mAb Fab L fragment
B
217N/AN/A
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
XPG
Query on XPG

Download SDF File 
Download CCD File 
B
7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid
Prostaglandin E1
C20 H34 O5
GMVPRGQOIOIIMI-DWKJAMRDSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.168 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 70.460α = 90.00
b = 82.030β = 90.00
c = 82.310γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
MOLREPphasing
MOSFLMdata reduction
SCALAdata scaling
BSSdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-09-10
    Type: Initial release