Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 51169.23 
• Atom Count: 3478 
• Residue Count: 457 
• Unique protein chains: 1

3WH5

Crystal structure of GH1 beta-glucosidase Td2F2

• DOI: 10.2210/pdb3WH5/pdb

• Classification: HYDROLASE
• Expression System: Escherichia coli


• Deposited: 2013-08-21 Released: 2014-09-03 
• Deposition Author(s): Jo, T., Fushinobu, S., Uchiyama, T., Yaoi, K.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.6 Å
• R-Value Free: 0.167 
• R-Value Work: 0.137 

Literature

Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity and transglycosylation activity of metagenomic beta-glucosidase Td2F2

Matsuzawa, T., Jo, T., Uchiyama, T., Manninen, J.A., Arakawa, T., Miyazaki, K., Fushinobu, S., Yaoi, K.

(2016) Febs J. --: --

• PubMed: 27092463 
• DOI: 10.1111/febs.13743
• Primary Citation of Related Structures:  
  5AYI, 5AYB, 3WH8, 3WH7, 3WH6

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
beta-glucosidase	A	457	N/A	Mutation(s): 0
Protein Feature View is not available: No corresponding UniProt sequence found.

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
NA	A	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N
GOL	A	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
NHE	A	2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID N-CYCLOHEXYLTAURINE; CHES C8 H17 N O3 S MKWKNSIESPFAQN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.6 Å
• R-Value Free: 0.167 
• R-Value Work: 0.137 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 68.802	α = 90.00
b = 69.624	β = 90.00
c = 96.057	γ = 90.00

Software Package:

Software Name	Purpose
HKL-2000	data collection
MOLREP	phasing
HKL-2000	data reduction
HKL-2000	data scaling
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2013-08-21 
• Released Date: 2014-09-03 
• Deposition Author(s): Jo, T., Fushinobu, S., Uchiyama, T., Yaoi, K.

Revision History 

• Version 1.0: 2014-09-03
  Type: Initial release
• Version 1.1: 2016-05-04
  Type: Database references