Crystal structure of a Na1-bound Na1,K1-ATPase preceding the E1P state
Kanai, R., Ogawa, H., Vilsen, B., Cornelius, F., Toyoshima, C.(2013) Nature 502: 201-206
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2013) Nature 502: 201-206
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sodium/potassium-transporting ATPase subunit alpha-1 | A, D [auth C] | 1016 | Sus scrofa | Mutation(s): 0  Gene Names: ATP1A1 EC: 3.6.3.9 (PDB Primary Data), 7.2.2.13 (UniProt) Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for P05024 (Sus scrofa) Explore P05024  Go to UniProtKB:  P05024 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05024 | ||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sodium/potassium-transporting ATPase subunit beta-1 | B, E [auth D] | 303 | Sus scrofa | Mutation(s): 0  Gene Names: ATP1B1 Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for P05027 (Sus scrofa) Explore P05027  Go to UniProtKB:  P05027 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05027 | ||||
Protein Feature ViewExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Na+/K+ ATPase gamma subunit transcript variant a | F [auth E], C [auth G] | 65 | Sus scrofa | Mutation(s): 0  Gene Names: FXYD2 Membrane Entity: Yes  | ![]() |
UniProt | |||||
Find proteins for Q58K79 (Sus scrofa) Explore Q58K79  Go to UniProtKB:  Q58K79 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q58K79 | ||||
Protein Feature ViewExpand | |||||
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Ligands 7 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PC1 Query on PC1 | IA [auth C], JA [auth C], KA [auth C], LA [auth C], MA [auth D], | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE C44 H88 N O8 P NRJAVPSFFCBXDT-HUESYALOSA-N | Ligand Interaction | ||
ADP Query on ADP | AA [auth C], J [auth A] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | Ligand Interaction | ||
CLR Query on CLR | FA [auth C], GA [auth C], HA [auth C], O [auth A], P [auth A], | CHOLESTEROL C27 H46 O HVYWMOMLDIMFJA-DPAQBDIFSA-N | Ligand Interaction | ||
NAG Query on NAG | NA [auth D], W [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | Ligand Interaction | ||
ALF Query on ALF | H [auth A], Y [auth C] | TETRAFLUOROALUMINATE ION Al F4 UYOMQIYKOOHAMK-UHFFFAOYSA-J | Ligand Interaction | ||
MG Query on MG | G [auth A], I [auth A], X [auth C], Z [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | Ligand Interaction | ||
NA Query on NA | BA [auth C], CA [auth C], DA [auth C], EA [auth C], K [auth A], | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 106.383 | α = 90 |
b = 211.6 | β = 90 |
c = 257.124 | γ = 90 |
Software Name | Purpose |
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BSS | data collection |
PHASER | phasing |
PHENIX | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |