3WGQ

Crystal structure of meso-dapdh Q154L/T173I/R199M/P248S/H249N/N276S mutant with DAP of from Clostridium tetani E88


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of meso-dapdh Q154L/T173I/R199M/P248S/H249N/N276S mutant with DAP of from Clostridium tetani E88

Liu, W.D.Li, Z.Huang, C.H.Guo, R.T.Wu, Q.Q.Zhu, D.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Meso-diaminopimelate dehydrogenase
A, B
326Clostridium tetani (strain Massachusetts / E88)Mutation(s): 6 
EC: 1.4.1.16
Find proteins for Q890V3 (Clostridium tetani (strain Massachusetts / E88))
Go to UniProtKB:  Q890V3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
API
Query on API

Download SDF File 
Download CCD File 
A
2,6-DIAMINOPIMELIC ACID
C7 H14 N2 O4
GMKMEZVLHJARHF-SYDPRGILSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.200 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 46.917α = 90.00
b = 135.702β = 110.43
c = 60.479γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
CNSrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data collection
MOLREPphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-08-20
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description