Download MendeleyCatalytic role of the calcium ion in GH97 inverting glycoside hydrolase
Okuyama, M., Yoshida, T., Hondoh, H., Mori, H., Yao, M., Kimura, A.To be published.
3WFA
Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase
- PDB DOI: https://doi.org/10.2210/pdb3WFA/pdb
- Classification: HYDROLASE
- Organism(s): Bacteroides thetaiotaomicron
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-07-18 Released: 2014-07-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.200
- R-Value Work: 0.171
- R-Value Observed: 0.171
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alpha-glucosidase | A, B | 726 | Bacteroides thetaiotaomicron | Mutation(s): 0 Gene Names: susB EC: 3.2.1.3 |  |
UniProt | |||||
Find proteins for G8JZS4 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore G8JZS4 Go to UniProtKB: G8JZS4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | G8JZS4 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDT Query on EDT | D [auth A], F [auth B] | {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID C10 H16 N2 O8 KCXVZYZYPLLWCC-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | C [auth A], E [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.200
- R-Value Work: 0.171
- R-Value Observed: 0.171
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.52 | α = 90 |
| b = 111.96 | β = 100.49 |
| c = 102.36 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| AMoRE | phasing |
| CNS | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2014-07-16 Deposition Author(s): Okuyama, M., Yoshida, T., Hondoh, H., Mori, H., Yao, M., Kimura, A.
Revision History (Full details and data files)
- Version 1.0: 2014-07-16
Type: Initial release
