Download MendeleyCrystal structure of ubiquitin conjugating enzyme E2 UbcA1 from Agrocybe aegerita
Li, D.F., Feng, L., Wang, D.C., Liu, W.To be published.
3WE5
Crystal structure of ubiquitin conjugating enzyme E2 UbcA1 from Agrocybe aegerita
- PDB DOI: 10.2210/pdb3WE5/pdb
- Classification: LIGASE
- Organism(s): Agrocybe aegerita
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-07-01 Released: 2014-07-09
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.234
- R-Value Work: 0.202
- R-Value Observed: 0.205
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin conjugating enzyme | A, B | 173 | Agrocybe aegerita | Mutation(s): 0 EC: 6.3.2.19 |  |
UniProt | |||||
Find proteins for H9CTH3 (Agrocybe aegerita) Explore H9CTH3 Go to UniProtKB: H9CTH3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | H9CTH3 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| ACY Query on ACY | C [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.234
- R-Value Work: 0.202
- R-Value Observed: 0.205
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 84.93 | α = 90 |
| b = 34.76 | β = 108.88 |
| c = 128.1 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| AMoRE | phasing |
| PHENIX | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Deposited Date: 2013-07-01
- Released Date: 2014-07-09 Deposition Author(s): Li, D.F., Feng, L., Wang, D.C., Liu, W.
Revision History (Full details and data files)
- Version 1.0: 2014-07-09
Type: Initial release
