3WCY | pdb_00003wcy

Murine Ifnar1 in complex with interferon-beta

PDB DOI: https://doi.org/10.2210/pdb3WCY/pdb

Classification: CYTOKINE RECEPTOR/CYTOKINE
Organism(s): Mus musculus
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2013-06-04 Released: 2013-07-24
Deposition Author(s): Vivian, J.P., de Weerd, N.A., Hertzog, P.J., Rossjohn, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.286 (Depositor), 0.321 (DCC)
R-Value Work:
0.237 (Depositor), 0.255 (DCC)
R-Value Observed:
0.239 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 3WCY

This is version 1.2 of the entry. See complete history.

Literature

Structural basis of a unique interferon beta signaling axis mediated via the IFNAR1 receptor

de Weerd, N.A., Vivian, J.P., Nguyen, T.K., Mangan, N.E., Gould, J.A., Braniff, S.J., Zaker-Tabrizi, L., Fung, K.Y., Forster, S.C., Beddoe, T., Reid, H.H., Rossjohn, J., Hertzog, P.J.

To be published.

Macromolecule Content

Total Structure Weight: 65.57 kDa
Atom Count: 3,896
Modeled Residue Count: 478
Deposited Residue Count: 564
Unique protein chains: 2

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Interferon alpha/beta receptor 1	A	403	Mus musculus	Mutation(s): 0 Gene Names: Ifar, Ifnar, Ifnar1
UniProt & NIH Common Fund Data Resources
Find proteins for P33896 (Mus musculus) Explore P33896 Go to UniProtKB: P33896
IMPC: MGI:107658
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P33896
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Interferon beta	B [auth I]	161	Mus musculus	Mutation(s): 0 Gene Names: Ifb, Ifnb, Ifnb1
UniProt
Find proteins for P01575 (Mus musculus) Explore P01575 Go to UniProtKB: P01575
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P01575
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.286 (Depositor), 0.321 (DCC)
R-Value Work: 0.237 (Depositor), 0.255 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.591	α = 90
b = 54.591	β = 90
c = 239.801	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
PHASER	phasing
BUSTER	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-07-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-07-24
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Refinement description
Version 1.2: 2024-10-16
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.