3W9U | pdb_00003w9u

Crystal structure of Lipk107

• PDB DOI: https://doi.org/10.2210/pdb3W9U/pdb

• Classification: HYDROLASE
• Organism(s): Proteus mirabilis HI4320
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-04-17 Released: 2013-12-04 
• Deposition Author(s): Yuan, Y.A.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.215 (Depositor), 0.160 (DCC) 
• R-Value Work: 
  0.179 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.181 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of Lipk107

Yuan, Y.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 31.96 kDa 
• Atom Count: 2,292 
• Modeled Residue Count: 274 
• Deposited Residue Count: 290 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative lipase	A	290	Proteus mirabilis HI4320	Mutation(s): 0  Gene Names: PMI0999 EC: 3.1.1.3
UniProt
Find proteins for B4EVM3 (Proteus mirabilis (strain HI4320)) Explore B4EVM3  Go to UniProtKB:  B4EVM3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.215 (Depositor), 0.160 (DCC) 
• R-Value Work:  0.179 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.181 (Depositor) 

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.484	α = 90
b = 65.484	β = 90
c = 63.871	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-12-04 
Deposition Author(s): Yuan, Y.A.

Revision History  

• Version 1.0: 2013-12-04
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description