3W9T

pore-forming CEL-III


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.239 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Hemolytic lectin CEL-III heptamer reveals its transmembrane pore-formation mechanism

Unno, H.Goda, S.Hatakeyama, T.

(2014) J.Biol.Chem. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemolytic lectin CEL-III
A, C, G, B, F, E, D
432Cucumaria echinataGene Names: cel3
Find proteins for Q868M7 (Cucumaria echinata)
Go to UniProtKB:  Q868M7
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
W9T
Query on W9T

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G
4-O-beta-D-galactopyranosyl-beta-D-fructofuranose
C12 H22 O11
JCQLYHFGKNRPGE-FCVZTGTOSA-N
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A, B, C, D, E, F, G
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PCA
Query on PCA
A, B, C, D, E, F, G
L-PEPTIDE LINKINGC5 H7 N O3GLU
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.239 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 219.800α = 90.00
b = 228.650β = 127.13
c = 133.020γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
PHENIXmodel building
SCALAdata scaling
REFMACrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-03-19
    Type: Initial release
  • Version 1.1: 2014-05-21
    Type: Other