3W8E

Crystal structure of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and a substrate D-3-hydroxybutyrate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.24 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

High resolution X-ray diffraction of D-3-hydroxybutyrate dehydrogenase from Alcaligenes faecalis complexed with NAD+ and D-3-hydroxybutyrate

Kanazawa, H.Tsunoda, M.Hoque, M.M.Suzuki, K.Yamamoto, T.Takenaka, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
D-3-hydroxybutyrate dehydrogenase
A
260Alcaligenes faecalisMutation(s): 0 
EC: 1.1.1.30
Find proteins for D0VWQ0 (Alcaligenes faecalis)
Go to UniProtKB:  D0VWQ0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
NAD
Query on NAD

Download SDF File 
Download CCD File 
A
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
3HR
Query on 3HR

Download SDF File 
Download CCD File 
A
(3R)-3-hydroxybutanoic acid
C4 H8 O3
WHBMMWSBFZVSSR-GSVOUGTGSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.24 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.165 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 62.780α = 90.00
b = 62.780β = 90.00
c = 119.490γ = 90.00
Software Package:
Software NamePurpose
MOSFLMdata reduction
ADSCdata collection
REFMACrefinement
MOLREPphasing
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-03-12
    Type: Initial release