3W3D

Crystal structure of smooth muscle G actin DNase I complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution

Sasaki, K.Sakabe, K.Sakabe, N.Kondo, H.Shimomur, M.

(1993) Acta Crystallogr.,Sect.A 49: C111-C112


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Actin, gamma-enteric smooth muscle
A
374Gallus gallusGene Names: ACTG2 (ACTA3, ACTSG)
Find proteins for P63270 (Gallus gallus)
Go to Gene View: ACTG2
Go to UniProtKB:  P63270
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Deoxyribonuclease-1
B
260Bos taurusGene Names: DNASE1 (DNL1)
EC: 3.1.21.1
Find proteins for P00639 (Bos taurus)
Go to Gene View: DNASE1
Go to UniProtKB:  P00639
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP

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Download CCD File 
A
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MAN
Query on MAN

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B
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
BMA
Query on BMA

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Download CCD File 
B
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
NAG
Query on NAG

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Download CCD File 
B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
HIC
Query on HIC
A
L-PEPTIDE LINKINGC7 H11 N3 O2HIS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Work: 0.196 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 42.000α = 90.00
b = 225.300β = 90.00
c = 77.400γ = 90.00
Software Package:
Software NamePurpose
X-PLORrefinement
BSSdata collection
WEISdata scaling
WEISdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-30
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description