3VXD

Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.185 

wwPDB Validation 3D Report Full Report



Literature

Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae

Nakamichi, Y.Maruyama, Y.Mikami, B.Hashimoto, W.Murata, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative uncharacterized protein gbs1889A, B, C, D398Streptococcus agalactiae NEM316Mutation(s): 1 
Gene Names: gbs1889
EC: 3.2.1 (PDB Primary Data), 3.2.1.180 (UniProt)
Find proteins for Q8E372 (Streptococcus agalactiae serotype III (strain NEM316))
Explore Q8E372 
Go to UniProtKB:  Q8E372
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.183 
  • R-Value Observed: 0.185 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 81.074α = 90
b = 95.914β = 104.06
c = 110.886γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-10-03
    Type: Initial release