3VWC | pdb_00003vwc

High resolution structure of proteinase inhibitor from Coprinopsis cinerea

• PDB DOI: https://doi.org/10.2210/pdb3VWC/pdb

• Classification: HYDROLASE INHIBITOR
• Organism(s): Coprinopsis cinerea
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-08-22 Released: 2012-09-05 
• Deposition Author(s): Renko, M., Sabotic, J., Turk, D.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.235 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.199 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.201 (Depositor) 

Literature

High resolution structure of proteinase inhibitor from Coprinopsis cinerea

Renko, M., Sabotic, J., Turk, D.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 16.72 kDa 
• Atom Count: 1,424 
• Modeled Residue Count: 146 
• Deposited Residue Count: 149 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine protease inhibitor 1	A	149	Coprinopsis cinerea	Mutation(s): 0
UniProt
Find proteins for D0EWJ0 (Coprinopsis cinerea) Explore D0EWJ0  Go to UniProtKB:  D0EWJ0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MPD	B [auth A]	(4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.235 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.199 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.201 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.626	α = 90
b = 38.243	β = 96.99
c = 54.89	γ = 90

Software Package:

Software Name	Purpose
SAINT	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
PROTEUM2	data collection
PROTEUM2	data reduction
PROTEUM2	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-09-05 
Deposition Author(s): Renko, M., Sabotic, J., Turk, D.

Revision History  

• Version 1.0: 2012-09-05
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references, Derived calculations, Refinement description