3VWC | pdb_00003vwc

High resolution structure of proteinase inhibitor from Coprinopsis cinerea

PDB DOI: https://doi.org/10.2210/pdb3VWC/pdb

Classification: HYDROLASE INHIBITOR
Organism(s): Coprinopsis cinerea
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-08-22 Released: 2012-09-05
Deposition Author(s): Renko, M., Sabotic, J., Turk, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free:
0.235 (Depositor), 0.234 (DCC)
R-Value Work:
0.199 (Depositor), 0.199 (DCC)
R-Value Observed:
0.201 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3VWC

This is version 1.1 of the entry. See complete history.

Literature

High resolution structure of proteinase inhibitor from Coprinopsis cinerea

Renko, M., Sabotic, J., Turk, D.

To be published.

Macromolecule Content

Total Structure Weight: 16.72 kDa
Atom Count: 1,424
Modeled Residue Count: 146
Deposited Residue Count: 149
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine protease inhibitor 1	A	149	Coprinopsis cinerea	Mutation(s): 0
UniProt
Find proteins for D0EWJ0 (Coprinopsis cinerea) Explore D0EWJ0 Go to UniProtKB: D0EWJ0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D0EWJ0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.50 Å
R-Value Free: 0.235 (Depositor), 0.234 (DCC)
R-Value Work: 0.199 (Depositor), 0.199 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.626	α = 90
b = 38.243	β = 96.99
c = 54.89	γ = 90

Software Package:

Software Name	Purpose
SAINT	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
PROTEUM2	data collection
PROTEUM2	data reduction
PROTEUM2	data scaling
SHELX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-09-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-09-05
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.