3VG8 | pdb_00003vg8

Crystal structure of hypothetical protein TTHB210 from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb3VG8/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2011-08-03 Released: 2011-11-30
Deposition Author(s): Agari, Y., Sakamoto, K., Agari, K., Kuramitsu, S., Shinkai, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.252 (Depositor), 0.201 (DCC)
R-Value Work:
0.201 (Depositor), 0.207 (DCC)
R-Value Observed:
0.201 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3VG8

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of hypothetical protein TTHB210, controlled by the [sigma]E/anti-[sigma]E regulatory system in Thermus thermophilus HB8, reveals a novel homodecamer

Agari, Y., Kuramitsu, S., Shinkai, A.

(2012) Proteins 80: 958-962

PubMed: 22231934 Search on PubMed
DOI: https://doi.org/10.1002/prot.23250
Primary Citation Related Structures:
3VG8

Organizational Affiliation

RIKEN SPring-8 Center, Harima Institute, Sayo, Hyogo 679-5148, Japan.

Macromolecule Content

Total Structure Weight: 129.14 kDa
Atom Count: 8,893
Modeled Residue Count: 1,104
Deposited Residue Count: 1,160
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical Protein TTHB210	A [auth G] B [auth H] C [auth I] D [auth J] E [auth A] A [auth G], B [auth H], C [auth I], D [auth J], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	116	Thermus thermophilus HB8	Mutation(s): 1 Gene Names: TTHB210
UniProt
Find proteins for Q53VW9 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q53VW9 Go to UniProtKB: Q53VW9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q53VW9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A [auth G] B [auth H] C [auth I] D [auth J] E [auth A] A [auth G], B [auth H], C [auth I], D [auth J], E [auth A], F [auth B], G [auth C], H [auth D], I [auth E], J [auth F]	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.252 (Depositor), 0.201 (DCC)
R-Value Work: 0.201 (Depositor), 0.207 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 154.977	α = 90
b = 100.16	β = 131.19
c = 106.366	γ = 90

Software Package:

Software Name	Purpose
BSS	data collection
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-11-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-11-30
Type: Initial release
Version 1.1: 2012-03-07
Changes: Database references
Version 1.2: 2024-10-30
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.