3VDM

Crystal Structure of VldE, the pseudo-glycosyltransferase which catalyzes non-glycosidic C-N coupling in Validamycin A biosynthesis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of VldE, the pseudo-glycosyltransferase which catalyzes non-glycosidic C-N coupling in Validamycin A biosynthesis

Cavalier, M.C.Yim, Y.-S.Asamizu, S.Neau, D.Mahmud, T.Lee, Y.-H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VldE
A, B
497Streptomyces hygroscopicus subsp. limoneusGene Names: vldE
Find proteins for Q15JG1 (Streptomyces hygroscopicus subsp. limoneus)
Go to UniProtKB:  Q15JG1
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.188 
  • Space Group: P 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 85.237α = 90.00
b = 48.562β = 91.88
c = 123.049γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata scaling
PHENIXphasing
PHENIXmodel building
XDSdata reduction
ADSCdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-09
    Type: Initial release