3VBH

Crystal structure of formaldehyde treated human enterovirus 71 (space group R32)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

A sensor-adaptor mechanism for enterovirus uncoating from structures of EV71.

Wang, X.Peng, W.Ren, J.Hu, Z.Xu, J.Lou, Z.Li, X.Yin, W.Shen, X.Porta, C.Walter, T.S.Evans, G.Axford, D.Owen, R.Rowlands, D.J.Wang, J.Stuart, D.I.Fry, E.E.Rao, Z.

(2012) Nat.Struct.Mol.Biol. 19: 424-429

  • DOI: 10.1038/nsmb.2255
  • Primary Citation of Related Structures:  
  • Also Cited By: 4CEW, 4CDX, 4CDW, 4CDU, 4CDQ, 4CEY

  • PubMed Abstract: 
  • Enterovirus 71 (EV71) is a major agent of hand, foot and mouth disease in children that can cause severe central nervous system disease and death. No vaccine or antiviral therapy is available. High-resolution structural analysis of the mature virus a ...

    Enterovirus 71 (EV71) is a major agent of hand, foot and mouth disease in children that can cause severe central nervous system disease and death. No vaccine or antiviral therapy is available. High-resolution structural analysis of the mature virus and natural empty particles shows that the mature virus is structurally similar to other enteroviruses. In contrast, the empty particles are markedly expanded and resemble elusive enterovirus-uncoating intermediates not previously characterized in atomic detail. Hydrophobic pockets in the EV71 capsid are collapsed in this expanded particle, providing a detailed explanation of the mechanism for receptor-binding triggered virus uncoating. These structures provide a model for enterovirus uncoating in which the VP1 GH loop acts as an adaptor-sensor for cellular receptor attachment, converting heterologous inputs to a generic uncoating mechanism, highlighting new opportunities for therapeutic intervention.


    Organizational Affiliation

    National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, China.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Genome Polyprotein, capsid protein VP1
A
297Enterovirus A71Mutation(s): 0 
Find proteins for B2ZUN0 (Enterovirus A71)
Go to UniProtKB:  B2ZUN0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein, capsid protein VP2
B
245Enterovirus A71Mutation(s): 0 
Find proteins for B2ZUN0 (Enterovirus A71)
Go to UniProtKB:  B2ZUN0
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Genome Polyprotein, vapsid protein VP3
C
242Enterovirus A71Mutation(s): 0 
Find proteins for B2ZUN0 (Enterovirus A71)
Go to UniProtKB:  B2ZUN0
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Genome Polyprotein, capsid protein VP4
D
58Enterovirus A71Mutation(s): 0 
Find proteins for B2ZUN0 (Enterovirus A71)
Go to UniProtKB:  B2ZUN0
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A, C
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
SPH
Query on SPH

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Download CCD File 
A
SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.217 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 330.000α = 90.00
b = 330.000β = 90.00
c = 748.400γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
MOLREPphasing
GDAdata collection
CNSrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-02-29
    Type: Initial release
  • Version 1.1: 2012-03-28
    Type: Database references
  • Version 1.2: 2012-04-18
    Type: Database references
  • Version 1.3: 2012-05-02
    Type: Database references