3VAD

Crystal structure of I170F mutant branched-chain alpha-ketoacid dehydrogenase kinase in complex with 3,6-dichlorobenzo[b]thiophene-2-carboxylic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.602 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of I170F mutant branched-chain alpha-ketoacid dehydrogenase kinase in complex with 3,6-dichlorobenzo[b]thiophene-2-carboxylic acid

Ahmed, K.Gui, W.J.Tso, S.C.Chuang, J.L.M Wynn, R.Chuang, D.T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial
A
418Rattus norvegicusGene Names: Bckdk
EC: 2.7.11.4
Find proteins for Q00972 (Rattus norvegicus)
Go to UniProtKB:  Q00972
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
ADP
Query on ADP

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Download CCD File 
A
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
0F1
Query on 0F1

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Download CCD File 
A
3,6-dichloro-1-benzothiophene-2-carboxylic acid
C9 H4 Cl2 O2 S
AAHPIJMQJAZYTM-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.602 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.226 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 128.079α = 90.00
b = 128.079β = 90.00
c = 74.035γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
PHENIXphasing
HKL-2000data scaling
HKL-2000data reduction
PHENIXmodel building
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-16
    Type: Initial release
  • Version 1.1: 2014-10-08
    Type: Structure summary