3V7O

Crystal structure of the C-terminal domain of Ebola virus VP30 (strain Reston-89)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the Reston ebolavirus VP30 C-terminal domain.

Clifton, M.C.Kirchdoerfer, R.N.Atkins, K.Abendroth, J.Raymond, A.Grice, R.Barnes, S.Moen, S.Lorimer, D.Edwards, T.E.Myler, P.J.Saphire, E.O.

(2014) Acta Crystallogr F Struct Biol Commun 70: 457-460

  • DOI: 10.1107/S2053230X14003811

  • PubMed Abstract: 
  • The ebolaviruses can cause severe hemorrhagic fever. Essential to the ebolavirus life cycle is the protein VP30, which serves as a transcriptional cofactor. Here, the crystal structure of the C-terminal, NP-binding domain of VP30 from Reston ebolavir ...

    The ebolaviruses can cause severe hemorrhagic fever. Essential to the ebolavirus life cycle is the protein VP30, which serves as a transcriptional cofactor. Here, the crystal structure of the C-terminal, NP-binding domain of VP30 from Reston ebolavirus is presented. Reston VP30 and Ebola VP30 both form homodimers, but the dimeric interfaces are rotated relative to each other, suggesting subtle inherent differences or flexibility in the dimeric interface.


    Organizational Affiliation

    Seattle Structural Genomics Center for Infectious Disease (SSGCID), 307 Westlake Avenue North, Suite 500, Seattle, WA 98109, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Minor nucleoprotein VP30
A, B
227Reston ebolavirus (strain Reston-89)Gene Names: VP30
Find proteins for Q8JPX6 (Reston ebolavirus (strain Reston-89))
Go to UniProtKB:  Q8JPX6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 49.310α = 90.00
b = 93.740β = 90.00
c = 111.220γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2012-02-08
    Type: Initial release
  • Version 1.1: 2014-05-14
    Type: Database references