3V6K

Replication of N2,3-Ethenoguanine by DNA Polymerases


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.60 Å
  • R-Value Free: 0.303 
  • R-Value Work: 0.229 
  • R-Value Observed: 0.234 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Replication of n(2) ,3-ethenoguanine by DNA polymerases.

Zhao, L.Christov, P.P.Kozekov, I.D.Pence, M.G.Pallan, P.S.Rizzo, C.J.Egli, M.Guengerich, F.P.

(2012) Angew Chem Int Ed Engl 51: 5466-5469


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
DNA polymerase IVA, B [auth J]347Saccharolobus solfataricus P2Mutation(s): 0 
Gene Names: dbhdpo4SSO2448
EC: 2.7.7.7
UniProt
Find proteins for Q97W02 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
Explore Q97W02 
Go to UniProtKB:  Q97W02
Protein Feature View
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  • Reference Sequence
  • Find similar nucleic acids by:  Sequence   |   Structure
  • Entity ID: 2
    MoleculeChainsLengthOrganismImage
    DNA (5'-D(P*GP*AP*AP*GP*GP*AP*TP*TP*CP*(2DT))-3')E [auth K], C [auth P]10N/A
    Protein Feature View
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    • Reference Sequence
    • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 3
      MoleculeChainsLengthOrganismImage
      DNA (5'-D(*TP*CP*AP*CP*(EFG)P*GP*AP*AP*TP*CP*CP*TP*TP*C)-3')D [auth B], F [auth M]14N/A
      Protein Feature View
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      • Reference Sequence
      Small Molecules
      Ligands 3 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      CA
      Query on CA

      Download Ideal Coordinates CCD File 
      I [auth A], J [auth A], K [auth A], N [auth J], P [auth J], Q [auth J], R [auth J]CALCIUM ION
      Ca
      BHPQYMZQTOCNFJ-UHFFFAOYSA-N
       Ligand Interaction
      MG
      Query on MG

      Download Ideal Coordinates CCD File 
      G [auth A], H [auth A], M [auth J], O [auth J]MAGNESIUM ION
      Mg
      JLVVSXFLKOJNIY-UHFFFAOYSA-N
       Ligand Interaction
      NA
      Query on NA

      Download Ideal Coordinates CCD File 
      L [auth A], S [auth J], T [auth P], U [auth B]SODIUM ION
      Na
      FKNQFGJONOIPTF-UHFFFAOYSA-N
       Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 3.60 Å
      • R-Value Free: 0.303 
      • R-Value Work: 0.229 
      • R-Value Observed: 0.234 
      • Space Group: P 1 21 1
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 51.855α = 90
      b = 110.953β = 102.7
      c = 100.238γ = 90
      Software Package:
      Software NamePurpose
      HKL-2000data collection
      REFMACrefinement
      HKL-2000data reduction
      HKL-2000data scaling
      REFMACphasing

      Structure Validation

      View Full Validation Report




      Entry History 

      Deposition Data

      • Deposited Date: 2011-12-20 
      • Released Date: 2012-04-25 
      • Deposition Author(s): Zhao, L.

      Revision History  (Full details and data files)

      • Version 1.0: 2012-04-25
        Type: Initial release
      • Version 1.1: 2012-06-06
        Changes: Database references